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Microtubules + Dam1 complex + Ndc80 complex cross-linked with EDC. Raw data for Figure 1 (312)

Linker:

edc

Search Programs:

kojak	1.4.2
percolator	2.08

Upload date:

2016-01-27 11:16:26

FASTA file:

EColiContamDam1MindCOMA-Ndc80-SspH1-NewCowTubulin.fasta

Cutoffs Applied On Import:

Peptide Cutoff:	q-value	0.05
PSM Cutoff:	q-value	0.05

PSM Filters:

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PSM Filters

PEP (percolator)		value has to be a decimal number
Pep. Diff. (kojak)		value has to be a decimal number
SVM Score (percolator)		value has to be a decimal number
Score (kojak)		value has to be a decimal number
dScore (kojak)		value has to be a decimal number
q-value (percolator)		value has to be <= 0.05 value has to be a decimal number

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Peptide Filters:

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Peptide Filters

PEP (percolator)		value has to be a decimal number
SVM Score (percolator)		value has to be a decimal number
p-value (percolator)		value has to be a decimal number
q-value (percolator)		value has to be <= 0.05 value has to be a decimal number

Cutoff value is not valid

Type Filter:

crosslinks looplinks unlinked

Modification Filter:

No modifications -0.98 15.99

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PSM Data

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dScore (kojak) Linker Mass (kojak) Obs Mass (kojak) PEP (percolator) Pep. Diff. (kojak) PPM Error (kojak) PSM Mass (kojak) q-value (percolator) Ret Time (kojak) Score (kojak) SVM Score (percolator)

Peptide Data

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p-value (percolator) PEP (percolator) q-value (percolator) SVM Score (percolator)

Summary Statistics

Digestion Statistics

Scan File Statistics

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Scan File Statistics

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Total Ion Current:
Total MS1 Ion Current:
Total MS2 Ion Current:
Number MS1 Scans:
Number MS2 Scans:
MS2 scans with a PSM meeting cutoffs
Crosslink:
Looplink:
Unlinked:
Combined:

MS1 Binned Ion Current: m/z vs/ Retention Time (click to view full size)

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PSM Level Statistics

Interactive QC Plots

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Charge State Statistics

M/Z Statistics

Peptide Length Statistics

Chromatography Statistics

PSM Error Estimates

PPM Error

Error Vs Retention Time

Error Vs M/Z

Modification Stats

PSM per Modification

Peptide Level Statistics

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QC Plot: Retention Time

Scan File:
Scans with:	crosslinks looplinks unlinked
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QC Plot: PSM Counts

Scan File:
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Note: Filtered on Import: Peptide Cutoffs: q-value: 0.05; PSM Cutoffs: q-value: 0.05
View as:	percentage raw counts
PSMs with:	crosslinks looplinks unlinked all
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QC Plot: PSM Score Vs Score

Scan File:
X-Axis Score:
Y-Axis Score:
Note: Filtered on Import: Peptide Cutoffs: q-value: 0.05; PSM Cutoffs: q-value: 0.05
PSMs with:	crosslinks looplinks unlinked
Max:	X: Y:

No Data

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Managed by Michael Riffle (mriffle@uw.edu)