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The molecular basis of integrated stress response silencing


Project Information
Title:
The molecular basis of integrated stress response silencing
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Abstract:
Chronic stress response activation impairs cell survival and causes devastating degenerative diseases. To counteract this, cells deploy dedicated silencing factors, such as the E3 ligase SIFI that terminates the mitochondrial stress response. How a single enzyme can sense stress across cellular scales and elicit timely stress response inactivation is poorly understood. Here, we report the structure of human SIFI, which revealed how this 1.3MDa complex can target hundreds of proteins for accurate stress response silencing. SIFI attaches the first ubiquitin to substrates using flexible domains within an easily accessible scaffold, yet builds linkage-specific ubiquitin chains at distinct, sterically restricted elongation modules in its periphery. Ubiquitin handover via a ubiquitin-like domain couples versatile substrate modification to precise chain elongation. Stress response silencing therefore exploits a catalytic mechanism that is geared to process many diverse proteins and hence allows a single enzyme to monitor and, if appropriate, modulate a complex cellular state.
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Notes:
This page provides public access to data associated with Yang et al. 2024. All raw data files from this work are available on ProteomeXchange ID: PXDxxxxxx
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[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
UBR4-HRI complex crosslinked with BS3 for 30 mins at room temp. (1988)
Linker: bs3
Search Programs:
kojak 2.0.3
percolator 2.08
Upload: 2024-03-05 16:46:40
FASTA file: Zhi_BS3_3pepCnt_fixed_plusRev.fasta
Raw MS data files:
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004_Dora_Neo_2024_0223_Zhi_90m_grad1_BS3_XL30K.mzML
004_Dora_Neo_2024_0223_Zhi_90m_grad1_BS3_XL30K.raw
005_Dora_Neo_2024_0223_Zhi_90m_grad2_BS3_XL15K.mzML
005_Dora_Neo_2024_0223_Zhi_90m_grad2_BS3_XL15K.raw
006_Dora_Neo_2024_0223_Zhi_90m_grad2_BS3_XL30K.mzML
006_Dora_Neo_2024_0223_Zhi_90m_grad2_BS3_XL30K.raw
007_Dora_Neo_2024_0223_Zhi_90m_grad2_BS3_XL60K.mzML
007_Dora_Neo_2024_0223_Zhi_90m_grad2_BS3_XL60K.raw
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Additional files:
Kojak.conf
Kojak.conf
Kojak.conf
Kojak.conf
© 2023 University of Washington
Managed by Michael Riffle (mriffle@uw.edu)