View ProXL Documentation
Signin
BRCA1/BARD1 intrinsically disordered regions facilitate chromatin recruitment an...


Project Information
Title:
BRCA1/BARD1 intrinsically disordered regions facilitate chromatin recruitment and ubiquitylation
X
Project Title cannot be empty
Abstract:
BRCA1/BARD1 is a tumor suppressor E3 ubiquitin (Ub) ligase with roles in DNA damage repair and in transcriptional regulation. BRCA1/BARD1 RING domains interact with nucleosomes to facilitate mono-ubiquitylation of distinct residues on the C-terminal tail of histone H2A. These enzymatic domains constitute a small fraction of the heterodimer, raising the possibility of functional chromatin interactions involving other regions such as the BARD1 C-terminal domains that bind nucleosomes containing the DNA damage signal H2A K15-Ub and H4 K20me0, or portions of the expansive intrinsically disordered regions found in both subunits. Herein, we reveal novel interactions that support robust H2A ubiquitylation activity mediated through a high-affinity, intrinsically disordered DNA-binding region of BARD1. These interactions support BRCA1/BARD1 recruitment to chromatin and sites of DNA damage in cells and contribute to their survival. We also reveal distinct BRCA1/BARD1 complexes that depend on the presence of H2A K15-Ub, including a complex where a single BARD1 subunit spans adjacent nucleosome units. Our findings identify an extensive network of multivalent BARD1-nucleosome interactions that serve as a platform for BRCA1/BARD1-associated functions on chromatin.
X
Project Abstract cannot be empty
Notes:
This page provides XL-MS data associated with Witus et al. 2023. The publication associated with this work is available here: http://doi.org/10.15252/embj.2023113565 All raw data files, fasta search databases and search results from this work are available on ProteomeXchange at: https://www.ebi.ac.uk/pride under ProteomeXchange ID: [PXD035345]
Explore Data
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
AZ933: WT longBCBDNuc, DSS 10 mins March 2022 (UWPR Exploris): KV 2.0.0alpha8 PV 2.08 (xlink05) (1915)
Linker: dss
Search Programs:
kojak 2.0.0 alpha 8
percolator 2.08
Upload: 2022-04-01 15:31:31
FASTA file: AZ933-936_3pepCnt_noXs.fasta
Raw MS data files:
X
Web Link URL is invalid
UWPRExp480_2022_0318_AZ_014_AZ933_xlink05.mzML
UWPRExp480_2022_0318_AZ_014_AZ933_xlink05.raw
{{linkLabel}}
Additional files:
Kojak.conf
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
AZ934: WT longBCBDNuc, DSS 45 mins March 2022 (UWPR Exploris): KV 2.0.0alpha8 PV 2.08 (xlink05) (1917)
Linker: dss
Search Programs:
kojak 2.0.0 alpha 8
percolator 2.08
Upload: 2022-04-03 13:24:42
FASTA file: AZ933-936_3pepCnt_noXs.fasta
Raw MS data files:
X
Web Link URL is invalid
UWPRExp480_2022_0318_AZ_015_AZ934_xlink05.mzML
UWPRExp480_2022_0318_AZ_015_AZ934_xlink05.raw
{{linkLabel}}
Additional files:
Kojak.conf
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
AZ935: WT longBCBDNuc, BS3 10 mins March 2022 (UWPR Exploris): KV 2.0.0alpha8 PV 2.08 (xlink05) (1918)
Linker: bs3
Search Programs:
kojak 2.0.0 alpha 8
percolator 2.08
Upload: 2022-04-03 13:33:06
FASTA file: AZ933-936_3pepCnt_noXs.fasta
Raw MS data files:
X
Web Link URL is invalid
UWPRExp480_2022_0318_AZ_024_AZ935_xlink05.mzML
UWPRExp480_2022_0318_AZ_024_AZ935_xlink05.raw
{{linkLabel}}
Additional files:
Kojak.conf
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
AZ936: WT longBCBDNuc, BS3 45 mins March 2022 (UWPR Exploris): KV 2.0.0alpha8 PV 2.08 (xlink05) (1919)
Linker: bs3
Search Programs:
kojak 2.0.0 alpha 8
percolator 2.08
Upload: 2022-04-03 13:41:09
FASTA file: AZ933-936_3pepCnt_noXs.fasta
Raw MS data files:
X
Web Link URL is invalid
UWPRExp480_2022_0318_AZ_025_AZ936_xlink05.mzML
UWPRExp480_2022_0318_AZ_025_AZ936_xlink05.raw
{{linkLabel}}
Additional files:
Kojak.conf
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
AZ937: K15Ub longBCBDNuc, DSS 10 mins March 2022 (UWPR Exploris): KV 2.0.0alpha8 PV 2.08 (xlink05) (1920)
Linker: dss
Search Programs:
kojak 2.0.0 alpha 8
percolator 2.08
Upload: 2022-04-03 14:05:14
FASTA file: AZ937_3pepCnt.fasta
Raw MS data files:
X
Web Link URL is invalid
UWPRExp480_2022_0318_AZ_053_AZ937_xlink05.mzML
UWPRExp480_2022_0318_AZ_053_AZ937_xlink05.raw
{{linkLabel}}
Additional files:
Kojak.conf
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
AZ938: K15Ub longBCBDNuc, DSS 45 mins March 2022 (UWPR Exploris): KV 2.0.0alpha8 PV 2.08 (xlink05) (1922)
Linker: dss
Search Programs:
kojak 2.0.0 alpha 8
percolator 2.08
Upload: 2022-04-03 14:21:29
FASTA file: AZ937_3pepCnt.fasta
Raw MS data files:
X
Web Link URL is invalid
UWPRExp480_2022_0318_AZ_054_AZ938_xlink05.mzML
UWPRExp480_2022_0318_AZ_054_AZ938_xlink05.raw
{{linkLabel}}
Additional files:
Kojak.conf
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
AZ939: K15Ub longBCBDNuc, BS3 10 mins March 2022 (UWPR Exploris): KV 2.0.0alpha8 PV 2.08 (xlink05) (1923)
Linker: bs3
Search Programs:
kojak 2.0.0 alpha 8
percolator 2.08
Upload: 2022-04-03 14:31:08
FASTA file: AZ937_3pepCnt.fasta
Raw MS data files:
X
Web Link URL is invalid
UWPRExp480_2022_0318_AZ_063_AZ939_xlink05.mzML
UWPRExp480_2022_0318_AZ_063_AZ939_xlink05.raw
{{linkLabel}}
Additional files:
Kojak.conf
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
AZ940: K15Ub longBCBDNuc, BS3 45 mins March 2022 (UWPR Exploris): KV 2.0.0alpha8 PV 2.08 (xlink05) (1921)
Linker: bs3
Search Programs:
kojak 2.0.0 alpha 8
percolator 2.08
Upload: 2022-04-03 14:13:22
FASTA file: AZ937_3pepCnt.fasta
Raw MS data files:
X
Web Link URL is invalid
UWPRExp480_2022_0318_AZ_064_AZ940_xlink05.mzML
UWPRExp480_2022_0318_AZ_064_AZ940_xlink05.raw
{{linkLabel}}
Additional files:
Kojak.conf
© 2023 University of Washington
Managed by Michael Riffle (mriffle@uw.edu)